CIMEs PUBLICATIONS, REVIEWS & CHAPTERSmaj. 25/01/18

Publications 

2017 (25 publications – 11* - 10 **- 3*** - 5 brevets)

* avec une autre équipe du LISBP /** avec un labo extérieur Français/*** avec un labo étranger (si possible nom du pays).

  • 2017 (*EAD9 et **) Auer, L., Mariadassou, M., O'Donohue, M., Klopp, C., Hernandez-Raquet, G. (2017). Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description. Molecular Ecology Resources. DOI : 10.1111/1755-0998.12700 (IF 7.332)
  • (*EAD9) Auer, L., Lazuka, A., Sillam-Dussès, D., Miambi, E., O’Donohue, M., Hernandez-Raquet, G. (2017) Uncovering the potential of termite gut microbiome for lignocellulose bioconversion in anaerobic batch bioreactors. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2017.02623.  (IF = 4.076)
  • (* EAD 8 et 15) Camarasa, C., Chiron, H., Daboussi, F., Della Valle, G., Dumas, C., Farines, V., Floury, J., Gagnaire, V., Gorret, N., Léonil, J., Mouret, J.-R., O’Donohue, M. J., Sablayroles, J.-M., Salmon, J.-M., Saulnier, L., Truan, G. (2017) INRA's research in industrial biotechnology: For food, chemicals, materials and fuels. Innovative Food Science & Emerging Technologies. doi:https://doi.org/10.1016/j.ifset.2017.11.008 (IF= 2,573)
  •  (* EAD11) Campelo D, Lautier T, Urban P, Esteves F, Bozonnet S, Truan G, Kranendonk M (2017) The hinge segment of human NADPH-cytochrome P450 reductase in conformational switching: the critical role of ionic strength. Frontiers in Pharmacology. doi: 10.3389/fphar.2017.00755 (IF 4.400)
  • (* EAD17) Claverie M., Cioci G., Vuillemin M., Monties N., Roblin P., Lippens G., Remaud-Simeon M. and Moulis C. 2017. Investigations on the determinants responsible for low molar mass dextran formation by DSR-M dextransucrase. ACS Catal. 7, 7106–7119 (IF = 10.6).
  • (**) Decout A., Silva-Gomes S., Drocourt D., Barbe S., André I., Lioux T., Pérouzel E., Vercellone A., Gilleron M., Prandi J., Tiraby G., Nigou J. 2017. Rational design of new adjuvant ligands of the C-type lectin Mincle. Proc. Natl. Acad. Sci. doi: 10.1073/pnas.1612421114 (IF= 10,285)
  • (*EAD3) Gauquelin C., Baffert C., Richaud P., Kamionka E., Etienne E., Guieysse D., Girbal L., Fourmond V., André I., Guigliarelli B., Léger C., Soucaille P., Meynial-salles I. (2017). Roles of the F-domain in [FeFe] hydrogenase. BBA – Bioenergetics (IF 4.86). doi:10.1016/j.bbabio.2017.08.010.
  • (**) Gerard D., Gueroult M., Casas-Godoy L., Condoret JS., André I., Marty A., Duquesne S., 2017 Efficient resolution of profen ethyl ester racemates by engineered Yarrowia lipolytica Lip2p lipase. Tet Asymmetry 28:433-441 (IF=2.126 )
  • (**) Gerard D., Camy S., Marty A., Condoret J.S. 2017. Resolution of 2-bromo-arylacetic acid ester by Yarrowia lipolytica lipase in water/supercritical CO2 two phase system. J supercrit fluid 121:96-104 (IF=2.579)
  • (**) Guo Z., Duquesne S., Bozonnet S., Ciocia G., Nicaud J.M., Marty A. and O’Donohue M.J. 2017. Conferring cellulose-degrading ability to Yarrowia lipolytica to facilitate a consolidated bioprocessing approach. Biotechnol Biofuels 10;132 (IF = 5.203)*
  • (**) Guo Z., Duquesne S., Bozonnet S., Nicaud JM., Marty A. and O’Donohue MJ. (2017). Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose. Biotechnol Biofuels 10:298 (IF = 5.203)*
  • (* EAD9) Lazuka, A., Roland, C., Barakat, A., Guillon, F., O'Donohue, M., Hernandez Raquet, G. (2017). Ecofriendly lignocellulose pretreatment to enhance the carboxylate production of a rumen-derived microbial consortium. Bioresource Technology, 236, 225-233. DOI : 10.1016/j.biortech.2017.03.083 (IF 5.651)
  • (* EAD9) Lazuka, A., Auer, L., O’Donohue, M. J., Hernandez-Raquet, G. 2017. Efficient carboxylate production from wheat straw by a microbial consortium derived from termite Nasutitermes ephratae gut microbiome. (2017) Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2017.02623 (IF = 4.076)
  • (**) Lomthong T., Hanphakphoom S., Kongsaeree P., Srisuk N., Guicherd M., Cioci G., Duquesne S., Marty A., Kitpreechavanich V. 2017 Enhancement of poly(L-lactide)-degrading enzyme production by Laceyella sacchari LP175 using agricultural crops as substrates and its degradation of poly(L-lactide) polymer. Polymer Degradation and Stability 143; 64-73 (IF = 3.38)
  • Montanier C., Chabot N., Emond S., Guieysse D., Remaud-Siméon M, Peruch F., André I. (2017). Engineering of Candida antarctica lipase B for poly(ε-caprolactone) synthesis. European PolymerJournal (IF 3.53). doi.org/10.1016/j.eurpolymj.2017.07.029.
  • (* EAD4) Nouaille S., Mondeil S., Finoux A.L., Moulis C., Girbal L., Cocaign-Bousquet M., 2017. The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression. Nucleic Acids Res doi: 10.1093 (IF = 10.16)
  • (* EAD15) Rigouin C., Gueroult M., Croux C., Dubois G., Borsenberger V., Barbe S., Marty A., Daboussi F., André I., Bordes F. 2017 Production of Medium Chain Fatty Acids by Yarrowia lipolytica: Combining Molecular Design and TALEN to Engineer the Fatty Acid Synthase. ACS Synth Biol. 2017 Jun 21. doi: 10.1021/acssynbio.7b00034 (IF:6.07).
  • (**) Scillipoti J., Nioi C., Marty A., Camy S., Condoret J.S. 2017 Prediction of conversion at equilibrium for lipase esterification in two-phase systems. Biochem Eng J, 117, Part A, 162–171 (IF=2.463)
  • (**) Ufarté L., Laville E., Duquesne S., Morgavi D., Robe P., Klopp C., Rizzo A., Pizzut-Serin S., Potocki-Veronese G. 2017. Discovery of carbamate degrading enzymes by functional metagenomics. PLOS One 12(12): e0189201. Doi:10.1371/journal.pone.0189201 (IF  2.806)
  • Vergés A., Cambon E., Barbe S., Moulis C., Remaud-Siméon M., André I. 2017. Isolation and characterization of an efficient mutant of Neisseria polysaccharea amylosucrase for the synthesis of controlled size maltooligosaccharides. Carbohydrate polymers 173, 403-411 (JCR = 4.219)
  • Vergés A., Cambon E., Barbe S., Moulis C, Remaud-Siméon M., André I. 2017. Novel product specificity toward erlose and panose exhibited by multi-site engineered mutants of amylosucrase. Protein Sci. 26: 566-577 (JCR = 3.039)
  • (* EAD5 et **) Walther T., Topham C., Irague R., Auriol C., Baylac A., Cordier H., Dressaire C., Lozano-Huguet L., Martineau N., Stodel M., Malbert Y., Maestracci M., Huet R., André I., Remaud-Siméon M., François J.-M. 2017. Construction of a synthetic methabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid. Nature Comm. 2017 Jun 20;8:15828 (JCR = 12.001)
  • (***) Wychowski, A., Bompard, C., Grimaud, F., Potocki-Véronèse, G., D’Hulst, C., Wattebled, F., & Roussel, X. (2017). Biochemical characterization of Arabidopsis thaliana Starch Branching Enzyme 2.2 reveals an enzymatic positive cooperativity. Biochimie. doi :10.1016/j.biochi.2017.07.013 (JCR 3.112)

 

 

2016

  • Abot A., Arnal G., Auer L., Lazuka A., Labourdette D., Lamarre S., Trouilh L., Laville E., Lombard V., Potocki-Veronese G., Henrissat B., O’Donohue M., Hernandez-Raquet G., Dumon C. and Anton Leberre V. 2016. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics 17:671. (IF = 4.34).
  • Brison, Malbert, Czaplicki, Mourey, Remaud-Simeon, Tranier 2016. Structural Insights into the Carbohydrate Binding Ability of an α-(1→ 2) Branching Sucrase from Glycoside Hydrolase Family 70, J. Biol. Chem 291 (14), 7527-7540. (IF = 4.651)
  • Culbertson A.T, Chou Y.-H., Smith A.L., Young Z.T., Tietze A.A., Cottaz S., Fauré R., and Zabotina O.A.* 2016 Enzymatic activity of arabidopsis xyloglucan xylosyltransferase 5. Plant Physiol. 171:1893-1904 (IF = 6.841)
  • Durand J., Biarnés X., Watterlot L., Bonzom C., Borsenberger V., Planas A, Bozonnet S., O'Donohue M.J., Fauré R. 2016 A single point mutation alters the transglycosylation/hydrolysis partition, significantly enhancing the synthetic capability of an endo-glycoceramidase. ACS Catal., 6(12), 8264-8275 (IF = 9.307)
  • Gherbovet O, Fauré R, Ferreira F, Durand J, Ragon M, Hostyn G, Record E, Bozonnet S, O'Donohue MJ. 2016 Design of chromogenic probes for efficient screening and evaluation of feruloyl esterase-like activities. J Mol. Catal. B: Enzym. 126:24-31 (IF = 2.128)
  • Hoarau M., Malbert Y., Irague R., Hureau C., Faller P., Gras E., André I., Remaud-Siméon M. 2016. A robust and efficient production and purification procedure of recombinant Alzheimer’s disease amyloid-b peptides. PLoS ONE 11(8): e0161209. doi:10.1371/journal.pone.0161209 (JCR = 3.234)
  • Koffi GY, M Remaud-Simeon M, AE Due AE, D Combes D. 2016 Isolation and chemoenzymatic treatment of glycoalkaloids from green, sprouting and rotting Solanum tuberosum potatoes for solanidine recovery Food Chem. Apr 1 2017;220:257-265. doi: 10.1016/j.foodchem.2016.10.014. Epub 2016 Oct 4. (IF=4.05)
  • S Maktouf, KB Jeddou, C Moulis, H Hajji, M Remaud-Simeon, R Ellouz-Ghorbel 2016 Evaluation of dough rheological properties and bread texture of pearl millet-wheat flour mix Journal of Food Science and Technology, 1-6 (IF=2.2)
  • Tauzin A.S., Laville E., Xiao Y., Nouaille S., Le Bourgeois P., Heux S., Portais J.C., Monsan P., Martens E.C., Potocki-Veronese G., Bordes F. 2016. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to E. coli. Mol Microbiol. 102(4): 579-592 (IF= 4.419)
  • Topham C.M., Barbe S., André I. 2016. An Atomistic Statistical Effective Energy Function for Computational Protein Design. J Chem Theory Comput. 12(8) 4146-68, 2016 (JCR = 6.205) 
  • Traoré S., Roberts K.E., Allouche D., Donald B.R., André I., Schiex T., Barbe S. 2016. Fast search algorithms for Computational Protein Design. J. Comp. Chem. (12) 1048-58,2016.  (IF=4.87).
  • Vuillemin, Claverie, Brison, Séverac, Bondy, Morel, Monsan, Moulis, Remaud-Siméon 2016 Characterization of the first α-(1→ 3) branching sucrases of GH70 family , J Biol Chem. 291(14):7687-702 .(IF = 4.651)
  • Wongwatanapaiboon J., Malilas W., Ruangchainikom C., Thummadetsak G., Chulalaksananukul S., Marty A., Chulalaksananukul W. 2016. Overexpression of Fusarium solani lipase in Pichia pastoris and its application in lipid degradation. Biotechnology and Biotechnical Equipment, 30 (5), 885-893 (IF = 0.373)
  • Wongwatanapaiboon J., Klinbunga S., Ruangchainikom C., Thummadetsak G., Chulalaksananukul S., Marty A., Chulalaksananukul W. 2016. Cloning, expression, and characterization of Aureobasidium melanogenum lipase in Pichia pastoris. Biosci, Biotechnol, and Biochem, 80 (11), 2231-2240 (IF = 1.063)

2015

  • Amari. M, Gabriel. V, Robert. R, Morel. S, Moulis. C, Gabriel. B, Remaud-Siméon, M, Fontagné-Faucher. C.2015 Overview of the glucansucrase equipment of Leuconostoc citreum LBAE-E16 and LBAE-C11, two strains isolated from sourdough. FEMS microbiology letters, 362 (1), 1-8   (IF = 2,121)
  • Arnal, G., Bastien, G., Monties, N., Abot, A., Leberre, V. A., Bozonnet, S., O’Donohue, M., and Dumon, C. 2015 Investigating the Function of an Arabinan Utilization Locus Isolated from a Termite Gut Community. Appl. Environ. Microbiol. 81, 31–39. (IF= 3.95)
  • Arab-Jaziri F, Bissaro B, Tellier C, Dion M, Fauré R, O'Donohue MJ. 2015 Enhancing the chemoenzymatic synthesis of arabinosylated xylo-oligosaccharides by GH51 α-l-arabinofuranosidase. Carbohydr. Res. 401:64-72 (IF = 1.966)
  • Bissaro B, Durand J, Biarnés X, Planas A, Monsan P, O'Donohue MJ, Fauré R. 2015 Molecular design of non-Leloir furanose-transferring enzymes from an α-l-arabinofuranosidase: a rationale for the engineering of evolved transglycosylases. ACS Catal., 5(8), 4598-4611 (IF = 9.312)
  • Brissonnet Y, Ladevèze S, Tezé D, Fabre E, Deniaud D, Daligault F, Tellier C, Sesták S, Remaud-Simeon M, Potocki-Veronese G, Gouin SG. 2015. Polymeric iminosugars improve the activity of carbohydrate-processing enzymes. Bioconjugate chemistry, 26(4), 766-772 (IF 4.513)
  • Cecchini DA, Fauré R, Laville E, Potocki-Véronèse G. 2015. Biochemical identification of the catalytic residues of a glycoside hydrolase family 120 β-xylosidase, involved in xylooligosaccharide metabolisation by gut bacteria. FEBS Lett., 589, 3098-3106 (IF = 3.169).
  • Cuskin F, Davies G, Baslé A, Ladevèze S, Potocki-Véronèse G, Gilbert H, Lowe L. 2015. The GH130 family of mannosidase phosphorylases contains glycoside hydrolases. J. Biol. Chem. 290(41), 25023-25033.(IF = 4.651)
  • Guo Z., Duquesne S., Bozonnet S., Cioci G., Nicaud J.M., Marty A., O’Donohue M.J. 2015. Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnol Biofuels, 2015 Aug 4;8:109 (IF = 6.04)
  • Houser J., Komarek J., Cioci G., Varrot A., Imberty A. and Wimmerova M., “Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent” Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):442-53 (IF= 2.68)
  • Ladevèze S, Cioci G, Roblin P, Mourey L, Tranier S, Potocki-Veronese G. 2015. Structural bases for N-glycan processing by mannoside phosphorylase. Acta Cryst. D71, 1335–1346. (IF 9.574)
  • Lazuka A, Auer L, Bozonnet S, Morgavi DP, O’Donohue MJ, Hernandez-Raquet G. 2015. Efficient anaerobic transformation of raw wheat straw by a robust cow rumen-derived microbial consortium. Bioresource Technology, doi: 10.1016/j.biortech.2015.07.084.sous presse. (IF = 4.494)
  • Maktouf S, Moulis C, Miled N, Chaabouni SE, Remaud-Simeon M, 2015. A highly thermostable lichenase from Bacillus sp UEB-S: Biochemical and molecular characterization, Journal of Molecular Catalysis B: Enzymatic. 115: 8-12 (IF=2,75)
  • Martinez, T., Texier, H., Nahoum, V., Lafitte, C., Cioci, G., Heux, L., Dumas, B., O’Donohue, M., Gaulin, E., Dumon, C., 2015. Probing the Functions of Carbohydrate Binding Modules in the CBEL Protein from the Oomycete Phytophthora parasitica. PLoS One 10. doi:10.1371/journal.pone.0137481. (IF 3.534)
  • Méjean C, Morzel C, Neyraud E, Issanchou S, Martin C, Bozonnet S, Urbano C, Schlich P, Hercberg S, Péneau S, Feron G. 2015  Salivary Flow and Composition are Associated with Liking and Usual Nutrient Intake.  PLOS One. 10(9):e0137473. (IF 3.234)
  • Meunchan M, Michely S, Devillers H, Nicaud JM, Marty A, Neuvéglise C. Comprehensive Analysis of a Yeast Lipase Family in the Yarrowia Clade. PLoS One. 2015 Nov 18;10(11):e0143096. (IF = 4.244)
  • Nioi C., Riboul D., Destrac P., Marty A., Marchal L., Condoret J.S. 2015. The centrifugal partition reactor, a novel intensified continuous reactor for liquid–liquid enzymatic reactions. Biochem Eng J, 103, 227–233 (IF = 2.463)
  • Passerini D., Vuillemin M., Ufarté L., Morel S., Loux V., Fontagné-Faucher C., Monsan P., Remaud-Siméon M., Moulis C.
  • 2015. Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 - identification of three novel α-transglucosylases. FEBS J. 282(11): 2115-30. (IF = 4.2)
  • Salamone S., Guerreiro C., Cambon E., André I., Remaud-Siméon M., Mulard L.A. 2015. Programmed chemo-enzymatic synthesis of the oligosaccharide component of a carbohydrate-based antibacterial vaccine candidate. Chem. Comm. 51, 2581-2584.(JCR = 6.718)
  • Salamone S., Guerreiro C., Cambon E., Hargreaves J.M., Tarrat N., Remaud-Siméon M., André I., Mulard L. 2015 Chemo-enzymatic synthesis of Shigella flexneri–specific oligosaccharides using disaccharides as transglucosylase acceptor substrates, J. Org. Chem., 2015 80(22):11237-57 (JCR = 4.721)
  • Simoncini D., Allouche D., de Givry S., Delmas C., Barbe S., Schiex T. Guaranteed Discrete Energy Optimization on Large Protein Design Problems 2015. J Chem Theory Comput. 11(12):5980-9.  (JCR = 6,205)
  • Verges A., Cambon E., Barbe S., Salamone S., Le Guen Y., Moulis C., Mulard L.A., Remaud-Siméon M., André I. 2015. Computer-aided engineering of a transglucosylase for the glucosylation of an unnatural disaccharide of relevance for bacterial antigen synthesis. ACS Catalysis. 5(2), 1186-1198 (JCR = 9.312)
  • Vidal-Melgosa, S., Pedersen, H. L., Schückel, J., Arnal, G., Dumon, C., Amby, D. B., Monrad, R. N., Westereng, B., and Willats, W. G. T. 2015 A new versatile microarray-based method for high throughput screening of carbohydrate-active enzymes. J. Biol. Chem. 290, 9020–9036 (IF= 4.6)
  • Viricel, C., Simoncini, D., Allouche, D., De Givry, S., Barbe, S., Schiex, T. Approximate counting with deterministic guarantees for affinity computation . In: Modelling, Computation and Optimization in Information Systems and Management Sciences (p. 165-176). Advances in Intelligent Systems and Computing, 360 (1ère édition). Full Research Paper Proceedings of the 3rd International Conference on MCO- 2015, Metz, FRA (2015-05-11 - 2015-05-13). CHE : Springer International Publishing.

2014

  • Allouche D, André I, Barbe S, Davies J, de Givry S, Katsirelos G, O’Sullivan B, Prestwitch S, Schiex T, Traoré S. 2014. Computational Protein Design as an optimization Problem. Artif. Intell. 212:59-79. (IF = 3.726)
  • Beopoulos A, Verbeke J, Bordes F, Guicherd M, Bressy M, Marty A, Nicaud JM. 2014. Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica. Applied Microbiol. Biotechnol. 98(1):251-62. (IF = 3.762)
  • Berland M., Offmann B., André I., Remaud-Siméon M. and Charton P. 2014. A web-based tool for rational screening of mutants libraries using ProSAR. Protein Engineering Design and Selection, 27:375-381. (JCR = 2.517)
  • Bissaro B, Saurel O, Arab-Jaziri F, Saulnier L, Milon A, Tenkanen M, Monsan P, O'Donohue MJ, Fauré R. 2014. Mutation of a pH-modulating residue in a GH51 a-l-arabinofuranosidase leads to a severe reduction of the secondary hydrolysis of transfuranosylation products. BBA-Gen. Subjects 1840(1):626-636. (IF = 3.848)
  • Borsenberger, V., Dornez, E., Desrousseaux, M.-L., Massou, S., Tenkanen, M., Courtin, C. M., Dumon, C., O’Donohue, M. J., and Fauré, R. 2014 A (1)H NMR study of the specificity of α-l-arabinofuranosidases on natural and unnatural substrates. Biochim. Biophys. Acta. 1840(10), 3106–3114 (IF= 3.82)
  • Cambon E, Barbe S, Pizzut-Serin S, Remaud-Simeon M, André I. 2014. Essential role of amino acid position 226 in oligosaccharide elongation by amylosucrase from Neisseria polysaccharea. Biotechnol. Bioeng., 111, 1719-1728. (IF =4.289)
  • Casas Godoy L, Meunchan M,  Cot M, Duquesne S, Bordes F, Marty A. 2014. Yarrowia lipolytica Lipase Lip2: an efficient enzyme for the production of Docosahexaenoic Acid Ethyl Esters Concentrates. J. Biotechnol. 180:30-36  (IF = 3.340)
  • Dimopoulou M., Vuillemin M., Campbell-Sills H., Lucas P., Ballestra P., Miot-Sertier C., Favier M., Coulon J., Moine V., Doco T., Roques M., Williams P., Petrel M., Gontier E., Moulis C., Remaud-Simeon M., Dols-Lafargue M. 2014. Exopolysaccharide (EPS) Synthesis by Oenococcus oeni: From Genes to Phenotypes. Plos One. 9(6) : e98898. (IF = 4.244)
  • Duquesne S, Bozonnet S, Bordes F, Dumon C, Nicaud JM, Marty A. 2014. Construction of a highly active xylanase displaying oleaginous yeast: Comparison of anchoring systems. PLOS One. 9(4):e95128, DOI: 10.1371/journal.pone.0095128  (IF = 4.244)
  • Malbert Y., Pizzut-Serin S., Massou S., Cambon E., Laguerre S., Monsan P., Lefoulon F., Morel S., André I. and Remaud-Simeon M. 2014. Extending the structural diversity of a-flavonoïd glycosides with engineered glucansucrases. ChemCatChem. 6(8),2282-2291 (IF = 5.307)
  • Nars G, Saurel O, Bordes F, Saves I, Remaud-Simeon M, André I, Milon A, Marty A. 2014. Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR studies. Protein Expr. Purif. 101:14-20 (IF = 1.507)
  • Rolland-Sabaté A., Guilois S., Grimaud F., Lancelon-Pin C., Roussel X., Vilso-Nielsen A., Putaux JL, Dhulst C, Potocki-Veronese G, Buleon A. 2013. Characterization of hyperbranched glycopolymers produced in vitro using enzymes. 2014. Anal. Bioanal. Chem. 406:1607-1618. (IF = 3.756)
  • Siguier B, Haon M, Nahoum V, Marcellin M, Burlet-Schiltz O, Coutinho PM, Henrissat B, Mourey L, Donohue MJ, Berrin JG, Tranier S, Dumon C. 2014. First structural insights into α-l-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. J. Biol. Chem. 289(8):5261-5273 (IF = 5.023)
  • Song L, Dumon C, Siguier B, André I, Eneyskaya EV, Kulminskaya A, Bozonnet S, O'Donohue MJ. 2014. Impact of an N-terminal extension on the stability and activity of the GH11 xylanase from Thermobacillus xylanilyticus. J. Biotechnol., 174:64-72. (IF = 3.340)
  • Vuillemin, M, Malbert Y, Laguerre S, Remaud-Simeon M, Moulis C. 2014. Optimizing the production of an a-(1→2) branching sucrase in Escherichia coli using statistical design. Appl. Microbiol. Biotechnol. Appl Microbiol Biotechnol (2014) 98:5173-5184  DOI 10.1007/s00253-014-5627-5. (IF = 3.762)
  • Passerini D., Vuillemin M., Laguerre S., Amari M., Loux V., Gabriel V., Robert H., Morel S., Monsan P., Gabriel B., Fontagné-Faucher C, Remaud-Siméon M, Moulis C. 2014. Genome Announc 26 :2(6) :e01179-14

2013

  •  Amari. M, Gomez Arango. L F, Gabriel. V, Robert. H, C, Morel. S, Moulis. C, Gabriel. B, Remaud-Siméon. M, Fontagné-Faucher. C. 2013. Characterization of a novel dextransucrase from Weissella confuse isolated from sourdough. Appl Microbiol Biot. 97 (12) : 5413-5422 (JCR = 3.689)
  •  Arab-Jaziri F., Bissaro B., Dion M., Saurel O., Harrison D., Ferreira F., Milon A., Tellier C., Fauré R., O'Donohue M.J. (2013) Engineering transglycosidase activity into a GH51 α-l-arabinofuranosidase. New Biotechnol. 30(5), 536-544 (JCR = 2.756)
  •  Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat H, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O’Donohue M. Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnology for Biofuels, 2013, 6:78 (JCR 6.088).
  •  Bejar. W,  Gabriel. V, Amari. M, Morel. S, Mezghani. M, Maguin. E,  Fontagné-Faucher. C, Bejar. S, Chouayekh. Characterization of glucansucrase and dextran from Weissella sp. TN610 with potential as safe food additives. H. Int J Biol Macromo, 2013, 52, 125-132 (JCR = 1.867)
  •  Boonvitthya, N., Burapatana, V.,  Bozonnet, S., O'Donohue,  M.  J. and Chulalaksananukul, W. (2013) Comparison of the heterologous expression of Trichoderma reesei endoglucanase II and cellobiohydrolase II in the yeasts Pichia pastoris and Yarrowia lipolytica. MolBiotechnol. Jun;54(2):158-69. (IF = 2.171).
  •  Borsenberger V., Dornez E., Desrousseaux M.-L., Courtin C.M., O'Donohue M.J., Fauré R. (2013) A substrate for the detection of broad specificity α-l-arabinofuranosidases with indirect release of a chromogenic group. Tetrahedron Lett. 2013, 54(24), 3063-3066 (JRC = 2.683)
  •  Bouraoui H, Rebib H, Ben Aissa M, Touzel JP, O'donohue M, Manai M. (2013) Paenibacillus marinum sp. nov., a thermophilic xylanolytic bacterium isolated from a marine hot spring in Tunisia. J. Basic Microb. 53(11):877-883. (JRC = 1.198)
  •  Brison Y, Laguerre S, Lefoulon F, Morel S, Monties N, Potocki-Veronèse G, Monsan P, Remaud-simeon M. Branching pattern of gluco-oligosaccharides and 1.5 kDa dextran grafted by the a-1,2 branching sucrase GBD-CD2. 2013. DOI Carbohydr Polym (JCR = 3.628)
  •  Casas-Godoy L., Marty A., Sandoval G., Ferreira-Dias S. (2013) Optimization of medium chain length fatty acid incorporation into olive oil catalyzed by immobilized Lip2 from Yarrowia lipolytica, Biochemical Engineering Journal 77 (2013) 20– 27 (IF 2,98)
  •  Cecchini D., E. Laville, S. Laguerre, P. Robe, M. Leclerc, J. Doré, B. Henrissat, M.Remaud-Simeon, P. Monsan and G. Potocki-Veronese. 2013. Functional metagenomics reveals novel pathways of prebiotic metabolisation by human gut bacteria. PLOS One 8(9): e72766. doi:10.1371/journal.pone.0072766 (IF = 4.09)
  •  Couturier M, Féliu J, Bozonnet S, Roussel A, Berrin JG. Molecular engineering of fungal GH5 and GH26 beta-(1,4)-mannanases toward improvement of enzyme activity. PLOS One. 2013 Nov 22;8(11) e79800. doi:10.1371/journal.pone.0079800. (IF = 4.09)
  • Daudé D., Champion E., Morel S., Guieysse D., Remaud-Siméon M. and André I. 2013. Probing substrate promiscuity of amylosucrase from Neisseria polysaccharea. ChemCatChem. 8, 2288-2295. (JCR = 5.18)
  • Daudé D. Topham C., Remaud-Siméon M., and André I. 2013. Probing impact of active site residue mutations on stability and activity of Neisseria polysaccharea amylosucrase. Protein Sci. 22, 1754-1765 (JCR = 2.73)
  • Elgue S., Conté A., Condoret J.S., Marty A. 2013 Continuous lipase esterification using Process Intensification technologies.  Journal of Chemical Technology & Biotechnology. DOI 10.1002/jctb.4247 (JCR = 2.5)
  • Elgue S., Conté A, Marty A. and Condoret J.S. (2013) Two-phase enzymatic reaction using Process Intensification technologies. Chemistry today vol. 31(6) (JCR 0.54).
  • Grimaud F., Lancelon-Pin C., Rolland-Sabaté A., Roussel X., Laguerre S., Viksø-Nielsen A., Putaux JL., Guilois S., Buléon A., D'Hulst C., Potocki-Véronèse G. In vitro synthesis of hyperbranched alpha-glucans using a biomimetic enzymatic toolbox, Biomacromolecules 2013 Feb 11;14(2):438-47. (JCR = 5.479)
  • Irague, R., Tarquis L., André I., Moulis C., Morel S. , Monsan P., Potocki-Veronese G. and Remaud-Simeon M. 2013. Combinatorial engineering of dextransucrase specificity. PLOS One 8(10): e77837. doi:10.1371/journal.pone.0077837 (IF = 4.09)
  • Ladevèze S. , Tarquis L., Cecchini D.A., Bercovici J., André I., Topham C.M., Morel S., Laville E.,  Monsan P., Lombard V., Henrissat B., and Potocki-Véronèse G. 2013. Role of glycoside-phopshorylases in mannose foraging by human gut bacteria. J. Biol. Chem., 288:32370-32383. (IF 5.33)
  • Maktouf S, Moulis C, Kamoun A, Chaari F, Chaabouni SE, Remaud-Simeon M., A laundry detergent compatible lichenase: Statistical optimization for production under solid state fermentation on crude millet. 2013. Industrial Crops and Products 43, 349-354 (JCR 2.87)
  • Maktouf S, Kamoun A, Moulis C, Remaud-Simeon M, Ghribi D, Chaabouni SE. (2013). A new raw-starch-digesting a-amylase: production under solid-state fermentation on crude millet and biochemical characterization. J Microbiol Biotechnol. 2013 Apr;23(4):489-98.
  • Marris, C.; Heams, T.; Kepes, F.; Campos, L.; Monsan, P.; Toussaint, J. F.; Benoit-Browaeys, D.; Haiech, J.; Alix, J. P.; Fellous, M.Marris et al. (2013) Measuring an Open and Responsible Culture Discussion. MS-Medicine Sciences.
  • Monsan P. (2013) Characterization of the scientific dynamic of synthetic biology Introduction. MS-Medicine Sciences.
  • Monsan P. (2013) Les biotechnologies blanches : révolution... ou évolution ? L'Actualité Chimique, juin-juillet-août 2013, N° 375-376, 17-23.
  • Monsan, P.; Bayer, T.; Alix, J. P.; Marris, C.; Aguiton, S.; de Brem, P.; la Salle, D.; Cerisy, T.; Margerit, S. (2013) Analysing the Contributions of Social Sciences Discussion. MS-Medicine Sciences.
  • Monsan, P. Lepargneur J.P. (2013) Les prébiotiques. In « Actualités permanentes en microbiologie clinique », Section III, Chapitre 17, Editions Eska, Paris.
  • Park, J. M.; Kondo, A.; Chang, J. S.; Chou, C. P.; Monsan, P. (2013) Biorefineries. Bioresource Technology.
  • Rivera I., Mateos J.C., Marty A., Sandoval G., Duquesne S. 2013. Lipase from Carica papaya latex presents high enantioselectivity towards the resolution of prodrug 2-bromo-phenylacetic acid octyl ester. Tetrahedron Letters; 54, 5523-5526. (JCR = 2.683)
  • Roblin P., Potocki-Veronese G., Guieysse D., Guérin F., Axelos M., J. Perez,  Buleon A.(2012), SAXS conformational tracking of amylose synthesized by amylosucrases. Biomacromolecules. 2013 Jan 14;14(1):232-9. (JCR = 5.478)
  • Roussel X., Lancelon-Pin C., Viksø-Nielsen A.,  Rolland-Sabaté A.,  Grimaud F.,  Potocki-Véronèse G., Buléon A.,  Putaux JL., D'Hulst C.,  Characterization of substrate and product specificity of the purified recombinant glycogen Branching Enzyme of Rhodothermus obamensis, Biochim Biophys Acta. 2013 Jan;1830(1):2167-77. (JCR = 5.0)
  • Skov LK, Pizzut-Serin S, Remaud-Simeon M, Ernst HA, Gajhede M, Mirza O. The structure of amylosucrase from Deinococcusradiodurans has an unusual open active-site topology. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 . 69(9):973-8.
  • Topham C., Rouquier M., Tarrat N. and André I. 2013. Adaptive Smith-Waterman Residue Match Seeding for Protein Structural Alignment. Proteins : Structure, Function, and Bioinformatics. 81(10), 1823-1839 (JCR = 3.33)
  • Traoré S., Allouche D., André I., de Givry S., Katsirelos G., Schiex T. and Barbe S. 2013.  A New Framework for Computational Protein Design through Cost Function Network Optimization. Bioinformatics. 29(17), 2129-2136 (JCR = 5.32)
  • Zhang H., Fauré R., François J.-M., Blanc P.J., de Billerbeck G.M. (2013) Xylosylation as an effective means for reducing yeast growth inhibition by 2-phenylethanol. J. Basic Microb. 53(9), 792-795 (JRC = 1.266)

 

Reviews

2017 

  • ***(Mexique) Herrera-González, A., Núñez-López, G., Morel, S., Amaya-Delgado, L., Sandoval, G., Gschaedler, A., Remaud-Simeon, M., Arrizon, J. (2017). Functionalization of natural compounds by enzymatic fructosylation. Appl Microbiol Biotechnol, DOI 10.1007/s00253-017-8359-5. (IF=3,337) (Mexique)***
  • ***(Danemark) Wilkens, C., Andersen, Dumon, C., Berrin, J.-G., Svensson (2017). GH62 arabinofuranosidases: Structure, function and applications. Biotechnology Advances, 35, 792-804. (IF 10.597) ***(Danemark)

2016

  • Ladevèze S., Laville L., Despres J., Mosoni P. and Potocki-Véronèse G. 2016. Mannoside recognition and degradation by bacteria. Biological Reviews. (IF = 10.7) In press
  • Moulis C., André I., Remaud-Siméon M. 2016. GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families. Cellular and Molecular Life Sciences. 73 (14), 2661-2679

2015

  • Bissaro B., Monsan P., Fauré R., O'Donohue M.J. 2015 Glycosynthesis in a Waterworld: new insight into the molecular basis of transglycosylation in retaining glycoside hydrolases. Biochem. J. 467(1):17-35 (IF = 4.79).
  • Heux, S., Meynial-Salles, I., O’Donohue, M. J., and Dumon, C. 2015. White biotechnology: state of the art strategies for the development of biocatalysts for biorefining. Biotechnology Advances.(IF 8.9) Accepted
  • Larraufie P, de Wouters T,  Potocki-Veronese G, Blottière HM, Doré J. 2015 Functional metagenomics to decipher food-microbe-host crosstalk. Proceedings of the Nutrition Society 74(1):1-4 (IF 4.937).
  • Ufarté L, Potocki-Véronèse G, Laville E. 2015. Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. Frontiers in Microbiology 6, article 553 (doi: 10.3389/fmicb.2015.00563) (IF 3.989).
  • Ufarté L., Duquesne S., Laville E., Potocki-Veronese G. 2015. Metagenomics for the discovery of pollutant degrading enzymes. Biotechnology Advances. 33(8), 1845-1854.(IF 9.599)

2014

  • André I, Potocki-Véronèse G, Barbe S, Moulis C, Remaud-Simeon M. 2014. CAZyme discovery and design for sweet dreams. Curr. Opin. Chem. Biol. 19:17-24. (IF = 9.256)
  • Daudé D., André I., Monsan P., Remaud-Siméon M. 2014. Successes in engineering glucansucrases to enhance glycodiversification. Royal Society of Chemistry book series, Carbohydr. Chem., 40, 624–645 

 

Proceedings

2016

  • Viricel C., Simoncini D., Barbe S., Schiex T. Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. In Principles and Practice of Constraint Programming: 22nd International Conference CP 2016 Full Research Paper. Springer International Publishing.

2015

  • Viricel C. Simoncini D. Allouche D. de Givry S. Barbe S. Schiex T. Approximate Counting with Deterministic Guarantees for Affinity Computation, Proceeding MCO 2015, 11-13 Mai, Metz.
  • C Dumon “CAZyChip: a bioChip for bacterial glycoside hydrolases detection and dynamic exploration of microbial diversity for plant cell wall hydrolysis.” 11th CBM, Helsinki, 10-13 May, 2015.

 

Chapters

2017

  • Wu H, Montanier CY, Dumon C. Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis. “Protein-Carbohydrate Interactions”, Methods in Molecular Biology. Vol 1588, pp 129-141.
  • Badruna L, Burlat V, Montanier CY. CBMs as Probes to Explore Plant Cell Wall Heterogeneity Using Immunocytochemistry. “Protein-Carbohydrate Interactions”, Methods in Molecular Biology. Vol 1588, pp 181-197.
  • Tauzin, A. S., Laville, E., Cecchini, D., Blottière, H. M., Leclerc, M., Doré, J., & Potocki-Veronese, G. (2017). Human Gut Metagenomics: Success and Limits of the Activity-Based Approaches. In Functional Metagenomics: Tools and Applications (pp. 161-178). Springer, Cham.*
  • Traoré S, Allouche D, André I, Schiex T, Barbe S. 2016 Deterministic search methods for Computational Protein Design. Computational Protein Design book, series Methods in Molecular Biology, Humana Press - Springer.  ISBN 978-1-4939-6637-0, **

2016

  • Traoré S, Allouche D, André I, Schiex T, Barbe S. 2016 Deterministic search methods for Computational Protein Design. Computational Protein Design book, series Methods in Molecular Biology, Humana Press - Springer.  ISBN 978-1-4939-6637-0

2015

  • Laville E, Ufarté L, Potocki-Veronese G. 2015. Découverte de nouvelles fonctions et familles protéiques : nouveaux défis pour les biotechnologies et l’écologie microbienne. In ‘La métagénomique : développements actuels et futures perspectives’. Ed. QUAE, collection Savoir Faire.35-49
  • Lourdin D, Putaux JL, Potocki-Veronese G, Chevigny C,  Rolland-Sabaté A, Buléon A. 2015. Crystalline structure in starch. In Starch – Springer. Ed. Y. Nakamura. 61-90.
  • Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S,  Simonet P, Franqueville L, Potocki-Veronese G 2015. Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes.  In Microbial Environmental Genomics (Methods in Molecular Biology) – Springer Series. Ed. F.M. Martin and S. Uroz. Methods Mol Biol. 2016;1399:257-71.
  • Tauzin AS, Laville E, Cecchini D, Blottière HM, Leclerc M, Doré J, Potocki-Véronèse G. 2015. Human gut metagenomics: success and limits of the activity-based approaches. In Functional Metagenomics: Tools and Applications – Springer.

2014

  • Arrizon J., Urias-Silvas J E., Sandoval G., Mancilla-Margalli N J., Gschaedler A., Morel S., Monsan P., 2014. Production and bioactivity of Fructan-Type Oligosaccharides. Food Oligosaccharides: Production, Analysis and Bioactivity. 184-196. Ed John Wiley & Sons.
  • Daudé D, André I, Monsan P, Remaud-Simeon M. 2014. Successes in engineering glucansucrases to enhance glycodiversification. Royal Society of Chemistry book series, Carbohydr. Chem., 40, 624–645

Patents

2017

Guicherd M., Vuillemin M., Benkhaled M., Duquesne S., Marty A. + CARBIOS

Novel proteases and uses thereof. PCT 1er dépôt décembre 2016 déposé décembre 2017

 

Guicherd M., Duquesne S., Marty A., André I., Gueroult M. + CARBIOS

Novel proteases and uses thereof. Déposée décembre 2017

 

Mulard L., Le heiget G., Hu Z., Barel L-A., André I., Moulis A., Remaud-Siméon M., Barbe S. Benkoulouche M., Ben Imeddourene A. (2017) Protected tetrasaccharides, their process of preparation and their use in the synthesis of bacterial oligosaccharides. US 62/528,277, filed July 3, 2017

 

Guo Z., Duquesne S., Bozonnet S., Nicaud JM., Marty A., O’Donohue M. J.

Conferring cellulose-degrading ability to Yarrowia lipolytica - Production of a strain able to degrade cellulose and metabolize glucose in an integrated process ». EP 17155699.6 déposée le 10/02/2017

 

Rigouin C., Guéroult M., Percheron B.,  Croux C., Barbe S., Daboussi F., André I., Bordes F., Marty A.,

Mutant yeast strain capable of producing medium chain fatty acids. Déposé le 13/01/2017  EP17305044

 

Senez V., Vlandas A., Lamant S., Cathala B., Moreau C., Potocki-Veronese G., Bozonnet S., Laville E., Cleret M.. Procédé de détection optique (2017). French patent filled by the Université de Lille 1 - Sciences et Technologies N° 17 54926