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Articles EAD2

2016

  • Chassaing, N., Davis, E. E., McKnight, K. L., Niederriter, A. R., Causse, A., David, V., Desmains, A., Lamarre, S., ... & Coubes, C. (2016). Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network. Genome Research, gr-196048.

2015

  • Noyer, C., Abot, A., Trouilh, L., Leberre, V. A., & Dreanno, C. (2015). Phytochip: Development of a DNA-microarray for rapid and accurate identification of Pseudo-nitzschia spp and other harmful algal species. Journal of Microbiological Methods.
  • Kempowsky-Hamon, T., Valle, C., Lacroix-Triki, M., Hedjazi, L., Trouilh, L., Lamarre, S., ... & Anton-Leberre, V. (2015). Fuzzy logic selection as a new reliable tool to identify molecular grade signatures in breast cancer–the INNODIAG study. BMC Medical Genomics, 8(1), 3.
  • Arnal, G., Bastien, G., Monties, N., Abot, A., Leberre, V. A., Bozonnet, S., ... & Dumon, C. (2015). Investigating the function of an arabinan utilization locus isolated from a termite gut community. Applied and environmental microbiology, 81(1), 31-39.

2014

  • Anton Leberre V. (2014) «Séquençage d’acides nucléiques : méthodes, applications, évolutions et enjeux» DOSSIER Techniques de l’Ingénieur - l’expertise technique et scientifique de référence. Bio11a
  • Frésard L., Leroux S., Servin B., Gourichon D., Dehais P., San Cristobal M., Marsaud N., Vignoles F., Bed'hom B., Coville J.L., Hormozdiari F., Beaumont C., Zerjal T., Vignal A., Morisson M., Lagarrigue S., Pitel F. 2014 Transcriptome-wide investigation of genomic imprinting in chicken. Nucleic Acids Res. 2014 April; 42(6): 3768–3782.
  • Cyntia R. Flores-Juárez, Véronique  Anton Leberre, Emmanuelle Trévisiol, Eva González-Jasso1, and Reynaldo C. Pless (2014) Hybridisation of N4-methylcytosine-containing amplicons on DNA microarrays. Journal of Biotechnology 189 (2014) 143–149
  • Coutable A., Randrianjatovo I., Noireaux V., Vieu C., Thibault C., Trévisiol E., François J.M. 2014. A comparative study of -hemolysin expression in supported lipid bilayers of synthetic and enriched complex bacterial lipid, Bionanoscience, DOI 10.1007/s12668-014-0127-8.*
  • Coutable A., Thibault C., Chalmeau J., François J.M., Vieu C., Noireaux V., Trévisiol E. 2014. Preparation of tethered-lipid bilayers on gold surfaces for the incorporation of integral membrane proteins synthesized by cell-free expression, Langmuir, DOI 10.1021/la5004758. IF : 4.186**
  • Hmaïed F., Helel S., Le Berre V., François JM., Leclercq A., Lecuit M., Smaoui H., Kechrid A., Boudabous A., Barkallah I. (2014) Prevalence, identification by a DNA microarray-based assay of human and food isolates Listeria spp. from Tunisia. Pathologie Biologie 62 24–29. IF : 1.67**

2013

  • Egea A., Trévisiol E., Vieu C. 2013. Direct patterning of probe proteins on an antifouling PLL-g-dextran coating for reducing the background signal of fluorescent immunoassays, Biointerphases, 8: 37. IF: 2.208*
  • Egea A., Mazenq L., Trévisiol E., Paveau V. Vieu C. 2013. Optical label free biodetection based on the diffraction of light by nanoscale proteins gratings, Microelectron Eng, 111:425-427. IF: 1.557*
  • Foncy J, Cau J-C, Bartual-Murgui C, François J-M, Trévisiol E & Sévérac C (2013). Comparison of polyurethane and epoxy resist master mold for nanoscale soft lithography. Microelectronic Engineering.
  • Pillet F, Sanchez A, Trévisiol E, Séverac C, Bouet J-Y, Anton Le Berre V. (2013) Dendrimer functionalization of gold surface improves the measurement of Protein-DNA interactions by Surface Plasmon Resonance imaging. Biosensors & Bioelectronics. (2013), vol 43 pp. 148-154
  • Muszkieta L., Beauvais A., Pähtz V., Gibbons J.G., Anton Leberre V., Beau R., Shibuya K., Rokas A., Francois J. M., Kniemeyer O., Brakhage A.A. and Latgé J.P. (2013) Investigation of Aspergillus fumigatus biofilm formation by various “omics” approaches. Front. Microbio. doi: 10.3389/fmicb.2013.00013.
  • Fredonnet J, Foncy J, Lamarre S, Cau J-C, Trévisiol E, Peyrade J-P, François J-M, Séverac C. (2013) Dynamic PDMS inking for DNA patterning by soft lithography. Microelectronic Engineering. Available online 29 March 2013. http://www.sciencedirect.com/science/article/pii/S016793171300347X

2012

  • Jauvert E., Dague E., Séverac M., Ressier L., Caminade A.M., Majoral J.P., Trévisiol E. (2012) Probing single molecule interactions by AFM using bio-functionalized dendritips, Sensors and actuators B: Chemical, 168, 436-441.
  • Pillet F.; Sanchez A.; Trevisiol E.; Severac M., Bouet J-Y.; Anton Leberre V. Dendrimer functionalization of gold surface improves the measurement of Protein-DNA interactions by Surface Plasmon Resonance imaging. Biosensors and Bioelectronics. Available online 20 December 2012. http://dx.doi.org/10.1016/j.bios.2012.12.023. (2013), vol 43 pp. 148-154

2011

  • Morin N, Cescut J, Beopoulos A, Lelandais G, Le Berre V, Uribelarrea JL, Molina-Jouve C, Nicaud JM. (2011) Transcriptomic Analyses During the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica. PLoS ONE, 6 (11) e27966
  • Flavien Pillet, Carmen Romera, Emmanuelle Trévisiol, Sophie Bellon, Marie-Paule Teulade-Fichou, Jean-Marie Francois, Geneviève Pratviel, Véronique Anton Leberre (2011) Surface plasmon resonance imaging (SPRi) as an alternative technique for rapid and quantitative screening of small molecules, useful in drug discovery. Sensors and Actuators B: Chemical, 157, 304-309.
  • Pillet F., Sanchez A., Lane Dave; Anton Leberre V., Bouet J-Y. (2011) Centromere Binding Specificity in assembly of the F Plasmid Partition Complex. Nucleic Acids Research, 1–10 doi:10.1093/nar/gkr457

2010

  • Anton-Leberre V., Haanappel E., Marsaud N., Trouilh L., Benbadis L., Boucherie H., Massou S. and François J.M. (2010). Exposure to high static or pulsed magnetic fields does not affectcellular processes in the yeast Saccharomyces cerevisiae. Bioelectromagnetics 31:28-38
  • Arellanes-Robledo, J., Salcido-Neyoy, M., Marquez-Quinones, A., Garcia-Roman, R., Beltran-Ramirez, O., Le Berre, V., Sokol, S., François, J. and Trevino-Villa, S. (2010) The celecoxib modulation of gene expression includes the Stat5 reactivation in early rat hepatocarcinogenesis. Anti-Cancer Drugs: 21: 411-422.
  • Pillet F., Thilbault C., Bellon S., Maillart E., Trévisiol E., Vieu C., François J.M., Anton-Leberre V. (2010) Simple surface chemistry to immobilize DNA probes that significantly increases sensitivity and spots density of surface plasmon resonance imaging based microarray systems. Sensors and Actuators B. 147:  87-92.

2009

  • Kuranda, K., Grabinska. K., Berges. T., Karst. F., Leberre. V., Sokol. S., Francois. J., Palamarczyk. G. (2009) The YTA7 gene is involved in the regulation of the isoprenoid pathway in the yeast Saccharomyces cerevisiae. FEMS Yeast Res 9, 381-390
  • Alava T., Berthet−Duroure N., Ayela C., Trévisiol E., Pugnière M., Morel Y., Rameil P., Nicu L., (2009) Parallel acoustic detection of biological warfare agents surrogates by means of piezoelectric immunochips, Sensors and Actuators B: Chemical, 138, 532−538.
  • Roupioz Y., Berthet-Duroure N., Leïchlé T., Pourciel J.-B., Mailley P., Cortes S., Villiers M.-B., Marche P., Livache T., Nicu L (2009). Individual Blood-Cell Capture and 2D Organization on Microarrays. Small DOI 10.1002/smll.200801941.
  • Cau J.C., Lalo H., Childérick Severac, Jean-Pierre Peyrade, Emmanuelle Trévisiol, Leberre V., François J.M., Vieu C. (2009). Molecular analysis for medicine: a new technological platform based on nanopatterning and label free optical detection. Oncologie, 11, 1-5.
  • Alava T., Berthet-Duroure N., Ayela C., Trévisiol E., Pugnière M., Morel Y., Rameil P., Nicu L. (2009) Parallel acoustic detection of biological warfare agents surrogates by means of piezoelctric immunochips, Sensors and actuators B, 138, 532-538.
  • Roupioz Y., Berthet-Duroure N., Leïchlé T., Pourciel J.-B., Mailley P., Cortes S., Villiers M.-B., Marche P., Livache T., Nicu L (2009). Individual Blood-Cell Capture and 2D Organization on Microarrays. Small DOI 10.1002/smll.200801941.
  • Lalo, H., Cau, J.C., Thibault, C., Marsaud, N. Severac, C and Vieu, C. (2009). Microscale multiple biomolecules printing in one step using a PDMS macrostamp. Microelectronic Engineering (In press).
  • Le Berre, V., Haanappel, E., Trouilh, L. Marsaud, N., Benbadis, L. and François, J. (2009). Exposure to high static or pulsed magnetic fields does not affect cellular processes in the yeast Saccharomyces cerevisiae. Bioelectromagnetics.Epub ahead of print PMID : 19603479
  • Arellanes-Robledo, J., Salcido-Neyoy, M., Marquez-Quinones, A., Garcia-Roman, R., Beltran-Ramirez, O., Le Berre, V., Sokol, S., François, J. and Trevino-Villa, S. (2009) The celecoxib modulation of gene expression includes the Stat5 reactivation in early rat hepatocarcinogenesis. Cancer Science (submitted).
  • Beltran-Ramirez, O., Sokol, S., Le Berre, V., François J., Arellanes-Robledo, J., Ayala-Sumuano, J. & Villa-Trevino, S. (2009) Chemoprotector caffeic acid phenyl ester modifies gene expression profiles after diethylnitrosamine administration in hepatocarcinogenesis. BMC Cell Biol. (submitted).
  • Kuranda, K., Grabinska. K., Berges. T., Karst. F., Leberre. V., Sokol. S., Francois. J., Palamarczyk. G. (2009) The YTA7 gene is involved in the regulation of the isoprenoid pathway in the yeast Saccharomyces cerevisiae. FEMS YEAST RESEARCH    9(3), 381-390

2008

  • Berthet N., Leïchle T., Pourciel J-B., Saya D., Martin C., Bausells J., Lora-Tomayo E., Perez-Murano F., François J., Trevisiol E. and Nicu L. (2008) Spot-in-spot deposition of biomolecules using a microcantilever-based-depositing device for MEMS functionalization. Biomed Microdevices 10 (4) 479 -487
  • Lamarre, C., Sokol, S. Debeaupuis, JP, Henry, C., Lacroix, C, Glaser, P., Coppée, J-Y.,François, J and Latgé,JP (2008) Transcriptomic analysis of the exit of dormancy of conidia of Aspergillus fumigatus. BMC Genomics, 9: 417.
  • Guimarães, P, M. Le Berre, V., Sokol, S., François J., Teixeira, J.A. and Domingues, L. (2008) Comparative transcriptome analysis between original and evolved recombinant lactose-consuming Saccharomyces cerevisiae strains. Biotechnol. J. DOI 10.1002/biot.2000800111

2007

  • Novo, M., Beltran, G., Rozes, N., Guillamon, J-M., Sokol, S., Leberre, V., François, J., and Mas, A. (2007). Early transcriptional response of wine yeast after rehydration: Osmotic shock and metabolic activation. FEMS Yeast Res. 7, 304 – 316.
  • Marquez-Quinones, A., Paris, A., Roussel, B., Perez-Carreon, J., Leberre, V., François, J., Villa-Trevino, S. and Gueraud, F. (2007) Proteasome activity deregulation in LEC rat hepatitis: following the insights of transcriptomics analysis. Omics , 11, 367-384.
  • Le Berre, V., Baranowski, E., Delplanche, M. Trouilh, L. and François, J. (2007) Detection of minority variants within bovine respiratory syncytial RNA virus population using oligonucleotide-based microarrays. J. Virol Method 148, 271 - 276.
  • Geneviève M., Vieu C., Carles R., Zwick A., Brière G., Salomé L., Trévisiol E. (2007) Biofunctionalization of gold nanoparticles and their spectral properties, Microelectronic Engineering, 84, 1710-1713.

2006

  • Chaize B., Nguyen M., Ruysschaert T., le Berre V, Trévisiol E, Caminade AM, Majoral JP, Pratviel G, Meunier B, Winterhalter M, and Fournier D, (2006) Microstructured Liposome Array, Bioconjugate chem., 17 (1), 245-247
  • Beltran, G, Novo, M., Leberre, V., Sokol, S., Guillamón, J-M, Mas, A., François, J. and Rozès, N. (2006). Integration of transcriptomic and biochemical analyses for understanding the global responses of low temperature winemaking fermentations. FEMS Yeast Res. 6, 1167 - 1183.
  • Pérez-Carreón, J.I., López-García, C., Fattel-Fazenda, S, Evelia Arce-Popoca, Alemán-Lazarini, L., Hernández-García, S., Le Berre, V., Sokol, S., Francois, J. and Villa-Treviño, S. (2006) Gene expression profiles related to the progression of preneoplastic nodules toward hepatocellular carcinoma in rats. Neoplasia 8, 373-383.
  • Kuranda, K., Leberre, V., Sokol, S., Palamarczyk, G. and François, J. (2006). Investigating the caffeine effects in the yeast Saccharomyces cerevisiae brings new insights into the connection between TOR, PKC and Ras/cAMP signalling pathways. Mol. Microbiol. 61 (5), 1147 - 1166.
  • Thibault C., Severac C., Trévisiol E., Vieu C. (2006). Microtransfer molding of hydrophobic dendrimers, Microelectronic Engineering, 83, 1513-1516.

2005

  • Nicu, L., Guirardel, M., Chambosse, F., Rougerie, P., Hinh, S., Trevisiol, E., François, J., Majoral, JP, Caminade, A-M., Cattan, E. and Bergaud, C. (2005). First step towards a fully integrated microelectromechanically-based bioassay: detection of streptavidin-gold nanoparticles interaction with biotinylated DNA using micromachined piezoelectric membranes. Sensors & Actuators B, 110, 125 - 136.
  • Thibault, C., Leberre V., CasimiriusS., Trévisiol, E., François, J. and. VieuC. (2005) Direct microcontact printing of oligonucleotides for biochips application. J. Nanobiotechnology 3:e7
  • Bourget C.,Trévisiol E., Bridon I., Kotera M., Lhomme J., Laayoun A. (2005). Biotin-phenyldiazomethane conjugates as labelling reagents at phosphate in mono and polynucleotides, Bioorganic and medicinal Chemistry, 13, 1453-1461.