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Articles EAD8

2016

Alfenore S, Molina-Jouve C (2016). Current status and future prospects of conversion of lignocellulosic resources to biofuels using yeasts and bacteria. Process Biochemistry 51(11):1747-1756 doi:http://dx.doi.org/10.1016/j.procbio.2016.07.028

 

Alfenore S, Molina-Jouve C (2016). Special Issue "Bioenergies, Present and Prospects" Foreword. Process Biochemistry 51(11):1745-1746 doi:10.1016/j.procbio.2016.10.019

 

Timoumi A, Cléret M, Bideaux C, Guillouet SE, Allouche Y, Molina-Jouve C, Fillaudeau L, Gorret N (2016). Dynamic behavior of Yarrowia lipolytica in response to pH perturbations: dependence of the stress response on the culture mode. Applied Microbiology and Biotechnology:1-16 doi:10.1007/s00253-016-7856-2

 

El Rayess Y, Manon Y, Jitariouk N, Albasi C, Peuchot MM, Devatine A, Fillaudeau L (2016). Wine clarification with Rotating and Vibrating Filtration (RVF): Investigation of the impact of membrane material, wine composition and operating conditions.Journal of Membrane Science 513:47-57 doi:10.1016/j.memsci.2016.03.058

 

Crepin L, Lombard E, Guillouet SE (2016). Metabolic engineering of Cupriavidus necator for heterotrophic and autotrophic alka(e)ne production. Metabolic Engineering 37:92-101 doi:10.1016/j.ymben.2016.05.002

 

Cavaille L, Albuquerque M, Grousseau E, Lepeuple AS, Uribelarrea JL, Hernandez-Raquet G, Paul E (2016). Understanding of polyhydroxybutyrate production under carbon and phosphorus-limited growth conditions in non-axenic continuous culture. Bioresource Technology 201:65-73 doi:10.1016/j.biortech.2015.11.003

 

Bideaux C, Montheard J, Cameleyre X, Molina-Jouve C, Alfenore S (2016). Metabolic flux analysis model for optimizing xylose conversion into ethanol by the natural C5-fermenting yeast Candida shehatae. Applied Microbiology and Biotechnology 100(3):1489-1499 doi:10.1007/s00253-015-7085-0

 

2015

Hajjaj H, Goma G, Francois JM (2015). Effect of the cultivation mode on red pigments production from Monascus ruber. Int J Food Sci Technol 50(8):1731-1736 doi:10.1111/ijfs.12803

 

Grunwald S, Mottet A, Grousseau E, Plassmeier JK, Popovic MK, Uribelarrea JL, Gorret N, Guillouet SE, Sinskey A (2015). Kinetic and stoichiometric characterization of organoautotrophic growth of Ralstonia eutropha on formic acid in fed-batch and continuous cultures.Microbial Biotechnology 8(1):155-163 doi:10.1111/1751-7915.12149

 

Froissard M, Canonge M, Pouteaux M, Cintrat B, Mohand-Oumoussa S, Guillouet SE, Chardot T, Jacques N, Casaregola S (2015). Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts. BMC Evol Biol 15 doi:10.1186/s12862-015-0369-2

 

Bornot J, Molina-Jouve C, Uribelarrea JL, Gorret N (2015). Quantitative Characterization of the Growth of Deinococcus geothermalis DSM-11302: Effect of Inoculum Size, Growth Medium and Culture Conditions. Microorganisms 3:441-463 doi:10.3390/microorganisms30x000x

 

2014

 

L. Richard,  S. E. Guillouet, J.-L. Uribelarrea (2014) Quantification of the transient and long-term response of Saccharomyces cerevisiae to carbon dioxide stresses of various intensities. Process Biochemistry. Sous Presse.

Bornot J, Aceves-Lara C. A., Molina-Jouve C., Uribelarrea J. L., Gorret N. (2014) Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300. Extremophiles. Sous presse .

 

Grunwald S., Mottet A., Grousseau E., Popović M. K., Uribelarrea J. L., Gorret N., Guillouet S.E., Sinskey A. (2014) Kinetic and stoichiometric characterization of organoautotrophic growth of Ralstonia eutropha on formic acid in fed-batch and continuous cultures. Microbial Biotechnology.  Sous presse. DOI: 10.1111/1751-7915.12149

 

E. Grousseau, J. Lu, N. Gorret, S.E. Guillouet andA. J. Sinskey (2014) Isopropanol production with engineered Cupriavidus necator as bioproduction platform. Appl Microbiol Biotechnol. 98, 4277-4290;

 

A. Ochoa-Estopier and S. E. Guillouet (2014) D-stat culture for studying the metabolic shifts from oxidativemetabolism to lipid accumulation and citric acid production inYarrowia lipolytica. J. Biotechnol. 170, 35– 41


Bornot, J., Molina-Jouve, C., Uribelarrea, J.-L. and Gorret, N., (2014) Growth of the extremophilic Deinococcus geothermalis DSM 11302 using co-substrate fed-batch culture. Appl. Microbiol. Biotechnol., 98(3), 1281-1290

 

Grousseau, E., E. Blanchet, S. Déléris, M. G. E. Albuquerque, E. Paul and J.-L. Uribelarrea (2014) Phosphorus limitation strategy to increase propionic acid flux towards 3-Hydroxyvaleric acid monomers in Cupriavidus necator. Bioresource Technol. 153, 206-215

 

Aguilar-Garnica E, Silva-Romero YE, Hernandez-Montelongo R, Garcia-Sandoval JP, Aceves-Lara CA (2014). Kinetic analysis for the esterification of high free fatty acid feedstocks with a structural identifiability approach. Eur J Lipid Sci Technol 116(11):1598-1607 doi:10.1002/ejlt.201400059

2013

 

Babau, M., Cescut, J., Allouche, Y., Lombaert-Valot, I., Fillaudeau, L., Uribelarrea, J.L., Molina-Jouve, C., (2013) Towards a Microbial Production of Fatty Acids as Precursors of Biokerosene from Glucose and Xylose. Oil Gas Sci. Technol. 68 (5), 899-911

 

A. Ochoa-Estopier and S. E. Guillouet (2014) D-stat culture for studying the metabolic shifts from oxidativemetabolism to lipid accumulation and citric acid production inYarrowia lipolytica. J. Biotechnol. 170 (2014) 35– 41 (IF 3.184)

 

Bornot., J., C. Molina-Jouve, J.L. Uribelarrea and Gorret N.. (2013) Growth of the extremophilic Deinococcus  geothermalis DSM 11302 using co-substrate fed-batch culture". Accepted in Appl Microbiol Biotechnol. (IF 3.689)

 

Cavaillé, L., E. Grousseau, M. Pocquet, A.-S. Lepeuple, J.L. Uribelarrea,
G. Hernandez-Raquet and E. Paul (2013) Polyhydroxybutyrate production by direct use of waste activated sludge in phosphorus-limited fed-batch culture, Bioresour. Technol.  149, 301-309 (IF 4.98).

 

Grousseau, E., E. Blanchet, S. Deleris, M. G. E. Albuquerque, E. Paul and J.-L. Uribelarrea (2013) Impact of sustaining a controlled residual growth on polyhydroxybutyrate yield and production kinetics in Cupriavidus necator, Bioresour. Technol. 148, 30-38 (IF 4.98).

 

J. Marc, D. Feria-Gervasio, J. R. Mouret and S. E. Guillouet (2013) Impact of oleic acid as co-substrate of glucose on “short” and “long-term” Crabtree effect in Saccharomyces cerevisiae. Microb Cell Fact. (2013) 12:83 (IF 3.55).

 

Pagliardini J , Hubmann G. , Alfenore S., Nevoigt E., Bideaux C.,Guillouet S.E. The metabolic costs of improving ethanol yield by reducing glycerol formation capacity under anaerobic conditions in Saccharomyces cerevisiae. Microb Cell Fact. (2013) 12:29 (IF 3.55)

 

L. Soussan, C. Guigui, C. Mathe, S. Alfenore and C. Cabassud. Enzyme-labeled phages detected by amperometry: A new method to study inline virus retention in membrane processes. AIChE Journal (2013) 59 (1), 68–78.

 

J. Crattelet, S. Ghnimi, P. Debreyne, I. Zaid, A. Boukabache, D. Esteve, L. Auret and L. Fillaudeau
On-line local thermal pulse analysis sensor to monitor fouling and cleaning: Application to dairy product pasteurisation with an ohmic cell jet heater.
Journal of Food Engineering (2013) ( http://dx.doi.org/10.1016/j.jfoodeng.2013.05.009 )

 

Lamia Ben Gaïda, Christophe Andre, Carine Bideaux, Sandrine Alfenore, Xavier Cameleyre, Carole Molina-Jouve and Luc Fillaudeau. Bioperformance interpretation of a two-stage membrane bioreactor with cell recycling for intensive microbial production using residence time and internal age distributions. Process Biochemistry, vol. 48 issue 1 January, 2013. p. 13-24, ( http://dx.doi.org/10.1016/j.procbio.2012.10.015)

 

Sunya, S., Bideaux, C., Molina-Jouve C., Gorret, N. Short-term dynamic behavior of Escherichia coli in response to successive glucose pulses on glucose-limited chemostat cultures. Journal of Biotechnology (2013). In press

 

Mohammad Amin Kazemi, Mohammad Soltanieh, Mehdi Yazdanshenas, Luc Fillaudeau. Influence of Crossflow Microfiltration on Ceramic Membrane Fouling and Beer Quality, Desalination and Water Treatment (DWT), 1-11, 2013 ( Doi: 10.1080/19443994.2013.769660).

 

Tien-Cuong NGUYEN, Dominique ANNE-ARCHARD, Véronique COMA, Xavier CAMELEYRE, Eric LOMBARD, Cédric BINET, Arthur NOUHEN, Kim-Anh TO and Luc FILLAUDEAU. In-situ rheometry of concentrated cellulose fibre suspensions and relationships with enzymatic hydrolysis. Bioressource Technology. Bioresource Technology, BITE11274, DOI: 10.1016/j.biortech.2013.01.110. 2013

 

2012

Ben Gaida L., Andre C., Bideaux C, Alfenore S, Cameleyre X, Molina-Jouve C, Luc Fillaudeau, Modelling of hydrodynamic behaviour of a two-stage bioreactor with cell recycling dedicated to intensive microbial production. Chem. Eng. J., Volume 183, 15 February 2012, Pages 222-230.

 

Brognaux, A., Neubauer, P., Twizere, J. P., Francis, F., Gorret, N., Thonart, P., Frank Delvigne, F. Direct and indirect use of GFP whole cell biosensors for the assessment of bioprocess performances: design of milliliter scale-down bioreactors. Biotechnol Prog. 2012 Nov 1. doi: 10.1002/btpr.1660.

 

Montheard J., Garcier S., Lombard E., Cameleyre X., Guillouet S., Molina-Jouve C., Alfenore S. Assessment of Candida shehatae viability by flow cytometry and fluorescent probes. J. Microbiol. Methods. (2012).91, 8-13.

 

Amillastre E., Aceves-Lara C., Uribelarrea J-L, Alfenore S, Guillouet S.E. .Dynamic model of temperature impact on cell viability and major product formation during fed-batch and continuous ethanolic fermentation in Saccharomyces cerevisiae. Bioresource Technology 117  (2012), pp. 242-250.

 

Aceves-Lara C.-A., Latrille Eric , Conte T. and Steyer Jean-Philippe
Online estimation of VFA, alkalinity and bicarbonate concentrations by electrical conductivity measurement during anaerobic fermentation - Water Science & Technology (IF 1.12)  65(7) pp 1281–1289

 

 

 

Sunya, S., Delvigne, F., Uribelarrea, J. L., Molina-Jouve C., Gorret, N (2012). Comparison of the Transient Responses of Escherichia coli to a Glucose Pulse of Various Intensities. Applied Microbiology and Biotechnology (IF 3.42) 95 (4  ) pp 1021-1034

 

Beaufort S., Da Silva T., Lafforgue C., Alfenore S. (2012), Fluorescent proteins as in-vivo and in-situ reporters to study the development of a Saccharomyces cerevisiae yeast biofilm and its invasion by the bacteria Escherichia coli. In Press in FEMS Microbiology Ecology

 

Gorret, N., Sunya, S., Delvigne, F., Uribelarrea, J. L., Molina-Jouve C. (2012). Real-time monitoring of metabolic shift and transcriptional induction of yciG::luxCDABE E.coli reporter strain to a glucose pulse of different concentrations. J. Biotechnol. 157 (3), 379- 390

 

Aguilar-Garnica E., García-Sandoval J. P., Aceves-Lara C. A., Escalante F. M. E.(2012),An asymptotic observer-based monitoring scheme for a class of plug flow reactors. Water Science & Technology 65(2) 205–213

 

 

2011

J. Cescut, E.Severac, C; Molina-Jouve, J.L. Uribelarrea (2011). J. Chromatography A(IF=4.1) 1218 (3), 373-379. Optimizing pressurized liquid extraction ofmicrobial lipids using the response surface method.

 

Ochoa-Estopier A., Lesage J., Gorret N., Guillouet S.E. (2011). Bioresour.Technol(IF 4.253) 102 (2), 1521-1527. Kinetic analysisof a Saccharomyces cerevisiae strainadapted for improved growth on glycerol: Implications for the development ofyeast bioprocesses on glycerol.

 

S.Beaufort, S. Alfenore, C.Lafforgue (2011) Use of fluorescent microorganisms to perform in vivo and insitu local characterization of microbial deposits. J.Membrane Sc. 369 (1-2), 30-39 (IF = 3.203)

 

Kerfai S,Fernandez A, Mathe S, Alfenore S.,Arlabosse P. (2011). Chem Eng J (IF 2.816) 167(1) 132-139. Production of green juice with an intensive thermo-mechanicalfractionation process. Part II: Effect of processing conditions on the liquidfraction properties.

 

Delvigne F., A.Brognaux, N. Gorret, P. Neubauer, A. Delafosse, M. L. Collignon, D. Toye, M.Crine, M. Boxus & P. Thonart (2011). In Press in Bioch. Eng.J. (IF 2.193). Characterization of the response of GFP microbialbiosensors sensitive to substrate limitation in scale-downbioreactors.

 

Delvigne, F., A.Brognaux, F. Francis, J. C. Twizere, N.Gorret, S. Sorensen, P. Thonart (2011) in press in Biotechnology Journal.Green Fluorescent Protein (GFP)leakage from microbial biosensors : useful information for the estimation ofthe scale-down effect.

 

Manon Y., Uribelarrea J.L., Molina-Jouve C., Anne-Archard D., Fillaudeau L., Identification of physical and biological interactions in cell cultures in a birreactor: On-line and off-line rheological characterization. Applied Rheology, 21:3, 35167, 2011.

 

Crattelet J., Fillaudeau L., Auret L., Salvagnac L., Boukabache A, Estève D. Micro-capteur pour la mesure en ligne et en continu de l’encrassement dans les procédés industriels et de traitement de l’eau : Réalisation et caractérisation du microsystème, Instrumentation, Mesure, Métrologie I2M, Revue des Systèmes I2M, DOI : 10.3166, vol.11, n°3.-4, 2011, 107-130.

 

2010

 

M. Héry, H.Sanguin, S. Perez-Fabiel, X. Lefebvre, T.M. Vogel, E. Paul, S. Alfenore (2010). Water research (IF 4.355) 44(20), 6133-6143.Monitoring of bacterial communities during low temperature thermal treatment ofactivated sludge combining DNA phylochip and respiratory techniques.

 

Pagliardini J, Hubmann G, Bideaux C, Alfenore S, Nevoigt E, Guillouet SE. (2010)Microb CellFact. (IF 3.338) 9 (1): 36. Quantitative evaluation of yeast'srequirement for glycerol formation in very high ethanol performance fed-batchprocess.

 

Fromanger,R.; Guillouet, S E; Uribelarrea, J L; Molina-Jouve, C; Cameleyre, X.(2010) J Ind Microbiol Biotechnol(IF 1.919) 37 (5): 437-445. Effect of controlled oxygen limitation on Candida shehatae physiology for ethanolproduction from xylose and glucose.

 

M. Yazdanshenas, S. A. R. Tabatabaee Nezhad, M. Soltanieh, A. Tavakkoli, A. A Babaluo, L. Fillaudeau, Dead-End Microfiltration of Rough Non-Alcoholic Beer by Different Polymeric Membranes, J. Am. Soc. Brew. Chem. 68(2):83-88, 2010. doi:10.1094 /ASBCJ-2010-0315-01

 

Fillaudeau L., Crattelet J., Auret L., Fouling monitoring using differential thermal analyse under steady and periodic heat flow. Encyclopedia of Agricultural, Food and Biological Engineering, Second Edition (2011), Ed. Dennis R. Heldman, Marcel Dekker Inc., 270 Madison avenue, New York, NY 10016, DOI: 10.1081/E-EAFE2-120045933, 1-11, 2010.

 

Ben Gaïda L., André C., Bideaux C., Alfenore S., Cameleyre X, Molina-Jouve C, Fillaudeau L., Modélisation hydrodynamique d'un réacteur bi-étagé avec recyclage cellulaire (BBRC) à travers l'étude de la distribution des temps de séjour (DTS) des phases gaz, liquide et biomasse catalytique, Ind. Alim. Agri. 127 (03-04), 10-20, 2010.

 

M. Yazdanshenas, M. Soltanieh, S. A.R. Tabatabaee Nezhad, L. Fillaudeau, Cross-Flow Microfiltration of Rough Non-Alcoholic Beer and Diluted malt extract with Tubular Ceramic Membranes: investigation of fouling mechanisms, J. Mem.Sci. 362, 306-316, 2010.

 

Fillaudeau L., Yazdanshenas M., Clarification in brewing industry: opportunities and industrial reality. Récent Progrès en Génie des Procédés, MEMPRO-IV, 100, 2010, ISBN: 2-910239-74-8, Ed. SFGP, Paris, France, 9-17, 2010.

 

2009

AthanasiosBeopoulos, Julien Cescut, RamdaneHaddouche, Jean-Louis Uribelarrea, Carole Molina-Jouve, Jean-Marc Nicaud. (2009)Progress in LipidResearch (IF 11.237), 48: 375-387Yarrowialipolytica as a model for bio-oil production

 

Sanchez-Gonzalez Y., Cameleyre X., Jouve-Molina C.,Goma G. & Alfenore S. (2009). Bioprocess and BiosystemsEngineering (IF 1.333) 32: 459-466. Dynamic microbial response under ethanol stress to monitor Saccharomycescerevisiae activity in different initial physiological states.

 

S. Beaufort, S. Alfenore, C. Lafforgue (2009) New Biotechnology (IF2.0) 25,208-209. Fluorescent microorganisms: a relevant tool to quantify therelationships between environmental conditions and 3D microbial organization inbiological aggregates.

 

Fillaudeau L., Ngyuen K., André C., Influence of flow regimes and heat power on residence time distribution in tubular Joule effect heater. J. Food Engineering, 95, 489-498, 2009.

 

2008

D.Feria-Gervasio, J.R. Mouret, N. Gorret, G. Goma, S.E. Guillouet (2008) AppliedMicrobiol. Biotechnol (IF 2.596) 78: 319-331. Oleicacid delays and modulates the transition from respiratory to fermentative metabolismin Saccharomyces cerevisiae after exposure to glucose excess (Publisher’serratum, Applied Microbiol. Biotechnol 78: 377).

 

A. Popp,H.T.T. Nguyen, K. Boulahya, C. Bideaux,S. Alfenore, S. E. Guillouet, E. Nevoigt (2008). Biotechnol. Bioeng.(IF2.936) 100, 3: 497-505. Fermentative production of L-glycerol 3-phosphateutilizing a S. cerevisiae strain withengineered glycerol biosynthetic pathway

 

Fyferling, M., Uribelarrea, J.L., Goma, G.,Molina-Jouve, C. (2008) Bioprocess andBiosystems Engineering (IF1.333), 31: 595-604. Oxygentransfer in intensive microbial culture

 

Bideaux, C., Goma G., Uribelarrea, J. L.,Dahhou B., Roux, G. (2008). InternationalJournal of Modelling, Identification and Control IJMIC 3(4): 413-426.Stoichiometric modelling approach for microbial culture monitoring.

 

Fillaudeau L., Debreyne P., Ronse G., Guerin R., Doubrovine N., Bonnet B., Desmarest J., Crattelet J., Auret L., "Contrôle d'un encrassement laitier en procédé continu : comparaison de trois méthodes ", Ind. Alim. Agr., 125 (01-02), 12-21, 2008.

 

2007

Legrand A., Berthou M., Fillaudeau L., "Characterization of solid-liquid suspensions (real, large and non-spherical particles in non newtonian carrier fluid) flowing in horizontal and vertical pipes", J. Food Engineering, 78, 2007, 345-355.

 

Fillaudeau L., Boissier B., Moreau A., Blanpain-Avet P., Ermolaev S., Jitariouk N., Gourdon A., "Investigation of rotating and vibrating filtration for clarification of rough beer", J. Food Engineering, 80, 2007, 206-217.

 

André C., Boissier B. and Fillaudeau L., "Residence time distribution in tubular Joule Effect Heaters with and without geometric modifications", J. Chem. Eng. Technol., 30, n°1, 1-9, 2007.

 

Legrand A., Leuliet J.C., Kesteloot R., Duquesne S., Fillaudeau L., " Physical, Mechanical, Thermal and Electrical properties of cooked red bean (Phaseolus Vulgaris L.) for continuous ohmic heating process", J. Food Engineering., 81, 2007, 447-458.

 

Fillaudeau L., Boissier B., Ermolaev S., Jitariouk N., Gourdon A., "Etude hydrodynamique d'un module de filtration dynamique", Ind. Alim. Agri., Septembre / Octobre, 124 (9), 8-16, 2007.

 

2006

C. Bideaux, S. Alfenore, X. Cameleyre , C. Molina-Jouve, J.-L. Uribelarrea, S.E. Guillouet(2006). Applied and Environmental Microbiology (IF 3.801). 72 (3), 2134-2140. Minimization of glycerolproduction during the high performance fed-batch ethanolic fermentation processin Saccharomyces cerevisiae, using a metabolic model as prediction tool.

 

J.R. Mouret, J. Jacobsen,S.E. Guillouet (2006) Letters in AppliedMicrobiology (IF 1.679) 42, 363-368.Kinetic analysis of atrehalase-overexpressing strain grown on trehalose: a new tool forrespiro-fermentative transition studies in Saccharomyces cerevisiae.

 

F.Ben Chaabane, A.S. Aldiguier, S. Alfenore, X. Cameleyre, P.J. Blanc, C. Bideaux, S.E. Guillouet, G. Roux, C. Molina-Jouve (2006). Bioprocess and Biosystems Engineering. (IF 1.333) 29 (1), 49-57.Very high ethanolproductivity in an innovative continuous two-stage bioreactor with cellrecycle.

 

Fillaudeau L., "Investigation of fouling phenomena using hot wire method", Encyclopedia of Agricultural, Food and Biological Engineering, Ed. Dennis R. Heldman, Marcel Dekker Inc., 270 Madison avenue, New York, NY 10016(http ://www.dekker.com/serlet/product/productid/E-EAFE), DOI 10.1081/E-EAFE-120040368, 2006, 1-8.

 

Fillaudeau L., Leuliet J.C., Tissier J.P., Maury V., Semet F., Debreyne P., Berthou M., Chopard F., "Étude de l'encrassement lors du traitement thermique du lait entier par effet Joule Direct", Ind. Alim. Agr., 123(09), 26-35, 2006.

 

Fillaudeau L., Blanpain-Avet P., Daufin G., "Water, wastewater and waste management in brewing industries", J. Cleaner Production, 14, 2006, 463-471.

 

Legrand A., Berthou M., Fillaudeau L., "Analyse de la distribution cumulée en particules dans des conduits cylindriques: application à l'écoulement de suspensions agroalimentaires solides – liquides", Ind. Agr. Alim., Janvier/Février, 123, 2006, 7-15.

 

Fillaudeau L., Winterton P., Leuliet J.C., Tissier J.P., Maury V., Semet F., Debreyne P., Berthou M., Chopard F., "Heat treatment of whole milk by direct Joule effect – Experimental and numerical approaches to fouling phenomena", J. Dairy Science, 89, 2006, 4475-4489.

 

2005

Colombie V, Bideaux C,Uribelarrea J.L., Goma G. (2005) The effect of glucose feeding andvariation in biomass on spiramycin production by Streptomyces ambofaciens Bioprocess and Biosystems Engineering(IF 1.333), 28(1), 55-61.