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Publications 2016

  1. Abot A., Arnal G., Auer L., Lazuka A., Labourdette D., Lamarre S., Trouilh L., Laville E., Lombard V., Potocki-Veronese G., Henrissat B., O’Donohue M., Hernandez-Raquet G., Dumon C. and Anton Leberre V. 2016. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics 17:671. (IF = 4.34).
  2. Brison, Malbert, Czaplicki, Mourey, Remaud-Simeon, Tranier 2016. Structural Insights into the Carbohydrate Binding Ability of an α-(1→ 2) Branching Sucrase from Glycoside Hydrolase Family 70, J. Biol. Chem 291 (14), 7527-7540. (IF = 4.651)
  3. Culbertson A.T, Chou Y.-H., Smith A.L., Young Z.T., Tietze A.A., Cottaz S., Fauré R., and Zabotina O.A.* 2016 Enzymatic activity of arabidopsis xyloglucan xylosyltransferase 5. Plant Physiol. 171:1893-1904 (IF = 6.841)
  4. Durand J., Biarnés X., Watterlot L., Bonzom C., Borsenberger V., Planas A, Bozonnet S., O'Donohue M.J., Fauré R. 2016 A single point mutation alters the transglycosylation/hydrolysis partition, significantly enhancing the synthetic capability of an endo-glycoceramidase. ACS Catal., 6(12), 8264-8275 (IF = 9.307)
  5. Gherbovet O, Fauré R, Ferreira F, Durand J, Ragon M, Hostyn G, Record E, Bozonnet S, O'Donohue MJ. 2016 Design of chromogenic probes for efficient screening and evaluation of feruloyl esterase-like activities. J Mol. Catal. B: Enzym. 126:24-31 (IF = 2.128)
  6. Hoarau M., Malbert Y., Irague R., Hureau C., Faller P., Gras E., André I., Remaud-Siméon M. 2016. A robust and efficient production and purification procedure of recombinant Alzheimer’s disease amyloid-b peptides. PLoS ONE 11(8): e0161209. doi:10.1371/journal.pone.0161209 (JCR = 3.234)
  7. Koffi GY, M Remaud-Simeon M, AE Due AE, D Combes D. 2016 Isolation and chemoenzymatic treatment of glycoalkaloids from green, sprouting and rotting Solanum tuberosum potatoes for solanidine recovery Food Chem. Apr 1 2017;220:257-265. doi: 10.1016/j.foodchem.2016.10.014. Epub 2016 Oct 4. (IF=4.05)
  8. S Maktouf, KB Jeddou, C Moulis, H Hajji, M Remaud-Simeon, R Ellouz-Ghorbel 2016 Evaluation of dough rheological properties and bread texture of pearl millet-wheat flour mix Journal of Food Science and Technology, 1-6 (IF=2.2)
  9. Tauzin A.S., Laville E., Xiao Y., Nouaille S., Le Bourgeois P., Heux S., Portais J.C., Monsan P., Martens E.C., Potocki-Veronese G., Bordes F. 2016. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to E. coli. Mol Microbiol. 102(4): 579-592 (IF= 4.419)
  10. Topham C.M., Barbe S., André I. 2016. An Atomistic Statistical Effective Energy Function for Computational Protein Design. Chem Theory Comput. 12(8) 4146-68, 2016 (JCR = 6.205) 
  11. Traoré S., Roberts K.E., Allouche D., Donald B.R., André I., Schiex T., Barbe S. 2016. Fast search algorithms for Computational Protein Design. J. Comp. Chem. (12) 1048-58,2016.  (IF=4.87).
  12. Vuillemin, Claverie, Brison, Séverac, Bondy, Morel, Monsan, Moulis, Remaud-Siméon 2016 Characterization of the first α-(1→ 3) branching sucrases of GH70 family , J Biol Chem. 291(14):7687-702 .(IF = 4.651)
  13. Wongwatanapaiboon J., Malilas W., Ruangchainikom C., Thummadetsak G., Chulalaksananukul S., Marty A., Chulalaksananukul W. 2016. Overexpression of Fusarium solani lipase in Pichia pastoris and its application in lipid degradation. Biotechnology and Biotechnical Equipment, 30 (5), 885-893 (IF = 0.373)
  14. Wongwatanapaiboon J., Klinbunga S., Ruangchainikom C., Thummadetsak G., Chulalaksananukul S., Marty A., Chulalaksananukul W. 2016. Cloning, expression, and characterization of Aureobasidium melanogenum lipase in Pichia pastoris. Biosci, Biotechnol, and Biochem, 80 (11), 2231-2240 (IF = 1.063)
  15. T. Lautier, P. Urban, J. Loeper, L. Jezequel, D. Pompon, G. Truan. Ordered chimerogenesis applied to CYP2B P450 enzymes, Biochim. Biophys. Acta Gen. Subj. 1860 (2016) 1395–1403.
  16. B.B. Palma, D. Moutinho, P. Urban, J. Rueff, M. Kranendonk, Cytochrome P450 expression system for high-throughput real-time detection of genotoxicity: Application to the study of human CYP1A2 variants, Mutat. Res. Toxicol. Environ. Mutagen. 806 (2016) 24–33.
  17. Rouvre I, Gauquelin C, Meynial-Salles I, Basseguy R. 2016. Impact of the chemicals, essential for the purification process of strict Fe-hydrogenase, on the corrosion of mild steel. Bioelectrochemistry. 109:9-23  
  18. Croux C, Nguyen NP, Lee J, Raynaud C, Saint-Prix F, Gonzalez-Pajuelo M, Meynial-Salles I, Soucaille P. 2016. Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum. Biotechnol. Biofuels. 9:23
  19. Yoo M, Croux C, Meynial-Salles I, Soucaille P. 2016. Elucidation of the roles of adhE1 and adhE2 in the primary metabolism of Clostridium acetobutylicum by combining in-frame gene deletion and a quantitative system-scale approachBiotechnol Biofuels. Apr 26;9:92. doi: 10.1186/s13068-016-0507-0.
  20. Sensi M, Baffert C, Greco C, Caserta G, Gauquelin C, Saujet L, Fontecave M, Roy S, Artero V, Soucaille P, Meynial-Salles I, Bottin H, de Gioia L, Fourmond V, Léger C, Bertini L. 2016. Reactivity of the Excited States of the H-Cluster of FeFe Hydrogenases. J Am Chem Soc. Oct 6.
  21. Nguyen NP, Linder S, Flitsch SK, Schiel-Bengelsdorf B, Dürre P, Soucaille P. 2016 Cap0037, a Novel Global Regulator of Clostridium acetobutylicum Metabolism. MBio. Oct 4;7(5).
  22. Vermassen A, Dordet-Frisoni E, de LaFoye A, Micheau P, Laroute V, Leroy S, Talon R. 2016. Adaptation of Staphylococcus xylosus to nutrients and osmotic stress in a salted meat model. Front Microbiol. Feb 7;87.
  23. Morin M, Ropers D, Letisse F, Laguerre S, Portais J-C, Enjalbert B, Cocaign-Bousquet M. 2016. The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coliMol Microbiol ; doi: 10.1111/mmi.13343
  24. Castelain M., Duviau M-P, Canette A, Schmitz P, Loubière P, Cocaign-Bousquet M, Piard J-C, Mercier-Bonin M. 2016. The nanomechanical properties of Lactococcus lactis pili are conditioned by the polymerized backbone pilin. PLoS ONE 11(3): e0152053. doi:10.1371/journal.pone.0152053
  25. Esquerré T, Turlan C, Bouvier M, Carpousis AJ, Girbal L, Cocaign-Bousquet M. 2016. The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli. Sci Rep. 2016 Apr 26;6:25057. doi: 10.1038/srep25057
  26. Castelain M, Duviau M-P, Oxaran V, Schmitz P, Cocaign-Bousquet M, Loubière P, Piard J-C, Mercier-Bonin M. 2016. Oligomerized backbone pilin helps piliated Lactococcus lactis to withstand shear flow. Biofouling, 32:8, 911-923, DOI: 10.1080/08927014.2016.1213817
  27. Radziwill-Bienkowska JM, Le DTL, Szczesny P, Duviau M-P, Aleksandrzak-Piekarczyk T, Loubière P, Mercier-Bonin M, Bardowski JK, Kowalczyk M. 2016. Adhesion of the genome-sequenced Lactococcus lactis subsp. Cremoris IBB477 strain is mediated by specific molecular determinants. Applied Microbiology and Biotechnology. DOI:10.1007/s00253-016-7813-0
  28. Laroute V, Yasaro C, Narin W, Mazzoli R, Pessione E, Cocaign-Bousquet M, Loubière P. 2016. GABA production in  Lactococcus lactis is enhanced by arginine and co-addition of malate. Front Microbiol. Jul 6;7:1050
  29. Guellerin M, Passerini D, Fontagné-Faucher C, Robert H, Gabriel V, Loux V, Klopp C, Le Loir Y, Coddeville M, Daveran-Mingot  M-L, Ritzenthaler P, Le Bourgeois P. 2016. Complete Genome Sequence of Lactococcus lactis subsp. lactis A12, a Strain Isolated from Wheat Sourdough. Genome Announcements 4:e00692-16
  30. Tauzin AS, Laville E, Xiao Y, Nouaille S, Le Bourgeois P, Heux S, Portais J.C, Monsan P,  Martens EC, Potocki-Veronese G, Bordes F. 2016. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to Escherichia coli. Molecular Microbiol. doi: 10.1111/mmi.13480
  31. Treitz C, Enjalbert B, Portais JC, Letisse F, Tholey A. 2016. Differential quantitative proteome analysis of Escherichia coli grown on acetate versus glucose. Proteomics. 16(21):2742-2746. doi: 10.1002/pmic.201600303
  32. Figueira Aburjaile F, Rohmer M, Parrinello H, Maillard M-B, Beaucher E, Henry G, Nicolas A, Madec M-N, Thierry A, Parayre S, Deutsch S-M, Cocaign-Bousquet M, Miyoshi A, Azevedo A, Le Loir Y, Falentin H. 2016.  Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage. BMC Genomics. Dec 8;17(1):1007
  33. Chassaing, N., Davis, E. E., McKnight, K. L., Niederriter, A. R., Causse, A., David, V., Desmains, A., Lamarre, S., ... & Coubes, C. (2016). Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network. Genome Research, gr-196048.
  34. Zerbib, D. (2016).  “Bacterial Cell Envelopes: Composition, Architecture, and Origin”. In the Handbook of Electroporation ",. editor, Damijan Miklavcic, publisher, Springer International Publishing  DOI: 10.1007/978-3-319-26779-1_28-1
  35. Schiavone, M., Elsztein, C., Formosa-Dague, C., Teste, M-A., Martin-Yken, H., Morais, M.A.jr, Dague, E. & François, J. (2016).An Atomic Force Microscopy study of the response of the yeast Saccharomyces cerevisiae to ethanol stress. Appl.Env Microbiol., 82: 4789-4801
  36. Martin-Yken, H., François, J. & Zerbib, D (2016) Knr4: a disordered hub protein at the heart of fungal cell wall signalling. Cellular Microbiology, 18(9) 1217-1227
  37. Liu, J., François, J & Capp, JC (2016)Use of gene expression as experimental parameters to test phenotypic effects. Yeast, 33 209-216
  38. Alkim, C., Trichez, D., Cam, Y., François, J & Walther, T (2016). The synthetic xylulose 1-phosphate pathway increases production of glycolic acid from xylose-rich sugar mixtures. BMC Biotechnol. Biofuels, 9:201
  39. Treitz C, Enjalbert B, Portais JC, Letisse F, Tholey A: Differential quantitative proteome analysis of Escherichia coli grown on acetate versus glucose. Proteomics 2016, 16(21):2742-2746.
  40. Tauzin AS, Laville E, Xiao Y, Nouaille S, Le Bourgeois P, Heux S, Portais JC, Monsan P, Martens EC, Potocki-Veronese G et al: Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to Escherichia coli. Molecular microbiology 2016, 102(4):579-592.
  41. Morin M, Ropers D, Letisse F, Laguerre S, Portais JC, Cocaign-Bousquet M, Enjalbert B: The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli. Molecular microbiology 2016, 100(4):686-700.
  42. Carnicer M, Vieira G, Brautaset T, Portais JC, Heux S: Quantitative metabolomics of the thermophilic methylotroph Bacillus methanolicus. Microbial cell factories 2016, 15:92.
  43. Alfenore S, Molina-Jouve C (2016). Current status and future prospects of conversion of lignocellulosic resources to biofuels using yeasts and bacteria. Process Biochemistry 51(11):1747-1756 doi:http://dx.doi.org/10.1016/j.procbio.2016.07.028
  44. Alfenore S, Molina-Jouve C (2016). Special Issue "Bioenergies, Present and Prospects" Foreword. Process Biochemistry 51(11):1745-1746 doi:10.1016/j.procbio.2016.10.019
  45. Timoumi A, Cléret M, Bideaux C, Guillouet SE, Allouche Y, Molina-Jouve C, Fillaudeau L, Gorret N (2016). Dynamic behavior of Yarrowia lipolytica in response to pH perturbations: dependence of the stress response on the culture mode. Applied Microbiology and Biotechnology:1-16 doi:10.1007/s00253-016-7856-2
  46. El Rayess Y, Manon Y, Jitariouk N, Albasi C, Peuchot MM, Devatine A, Fillaudeau L (2016). Wine clarification with Rotating and Vibrating Filtration (RVF): Investigation of the impact of membrane material, wine composition and operating conditions.Journal of Membrane Science 513:47-57 doi:10.1016/j.memsci.2016.03.058
  47. Crepin L, Lombard E, Guillouet SE (2016). Metabolic engineering of Cupriavidus necator for heterotrophic and autotrophic alka(e)ne production. Metabolic Engineering 37:92-101 doi:10.1016/j.ymben.2016.05.002
  48. Cavaille L, Albuquerque M, Grousseau E, Lepeuple AS, Uribelarrea JL, Hernandez-Raquet G, Paul E (2016). Understanding of polyhydroxybutyrate production under carbon and phosphorus-limited growth conditions in non-axenic continuous culture. Bioresource Technology 201:65-73 doi:10.1016/j.biortech.2015.11.003
  49. Bideaux C, Montheard J, Cameleyre X, Molina-Jouve C, Alfenore S (2016). Metabolic flux analysis model for optimizing xylose conversion into ethanol by the natural C5-fermenting yeast Candida shehatae. Applied Microbiology and Biotechnology 100(3):1489-1499 doi:10.1007/s00253-015-7085-0
  50. Castelain, M.; Duviau, M. P.; Oxaran, V.; Schmitz, P.; Cocaign-Bousquet, M.; Loubiere, P.; Piard, J. C.; Mercier-Bonin, M., Oligomerized backbone pilin helps piliated Lactococcus lactis to withstand shear flow. Biofouling 2016, 32 (8), 911-23.
  51. Castelain, M.; Duviau, M. P.; Canette, A.; Schmitz, P.; Loubiere, P.; Cocaign-Bousquet, M.; Piard, J. C.; Mercier-Bonin, M., The Nanomechanical Properties of Lactococcus lactis Pili Are Conditioned by the Polymerized Backbone Pilin. PLoS One 2016, 11 (3), e0152053
  52. Crousier C., Pic J.S, Albet J., Baig S., Roustan M.,  (2016) Urban wastewater treatment by catalytic ozonation,Ozone Science and Engineering 38(1):3-13
  53. Ahmadi A., (2016) Memory-based Adaptive Partitioning (MAP) of search space for the enhancement of convergence in Pareto-based multi-objective evolutionary algorithms, Applied Soft Computing, 41(2016) 400-417
  54. Ahmadi A., Tiruta-Barna L., Capitanescu F., Benetto E., Marvuglia A., (2016) An archive-based multi-objective evolutionary algorithm with adaptive search space partitioning to deal with expensive optimization problems: application to process eco-design, Computers and Chemical Engineering 87 (2016) 95–110